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Aguirre-Hernandez, E, Gaxiola-Castro G, Najera-Martinez S, Baumgartner T, Kahru M, Mitchell BG.  2004.  Phytoplankton absorption, photosynthetic parameters, and primary production off Baja California: summer and autumn 1998. Deep-Sea Research Part Ii-Topical Studies in Oceanography. 51:799-816.   10.1016/j.dsr2.2004.05.015   AbstractWebsite

To estimate ocean primary production at large space and time scales, it is necessary to use models combined with ocean-color satellite data. Detailed estimates of primary production are typically done at only a few representative stations. To get survey-scale estimates of primary production, one must introduce routinely measured Chlorophyll-a (Chl-a) into models. For best precision, models should be based on accurate parameterizations developed from optical and photosynthesis data collected in the region of interest. To develop regional model parameterizations C-14- bicarbonate was used to estimate in situ primary production and photosynthetic parameters (alpha*, P-m*, and E-k) derived from photosynthesis-irradiance (P-E) experiments from IMECOCAL cruises to the southern California Current during July and October 1998. The P-E experiments were done for samples collected from the 50% surface light depth for which we also determined particle and phytoplankton absorption coefficients (a(p), a(phi), and a(phi)*). Physical data collected during both surveys indicated that the 1997-1998 El Ni (n) over tildeo was abating during the summer of 1998, with a subsequent transition to the typical California Current circulation and coastal upwelling conditions. Phytoplankton chl-a and in situ primary production were elevated at coastal stations for both surveys, with the highest values during summer. Phytoplankton specific absorption coefficients in the blue peak (a(phi)*(440)) ranged from 0.02 to 0.11 m(2) (mg Chl-a)(-1) with largest values in offshore surface waters. In general a(phi)*5 was lower at depth compared to the surface. P-E samples were collected at the 50% light level that was usually in the surface mixed layer. Using alpha* and spectral absorption, we estimated maximum photosynthetic quantum yields (phi(max); mol C/mol quanta). phi(max) values were lowest in offshore surface waters, with a total range of 0.01-0.07. Mean values of phi(max) for July and October were 0.011 and 0.022, respectively. In July P-m* was approximately double and alpha* was about 1.4 times the values for October. Since the P-E samples were generally within the upper mixed layer, these tendencies in the photosynthetic parameters are attributed to deeper mixing of this layer during October when the mean mixed layer for the photosynthesis stations was 35m compared to a mean of 10m in July. Application of a semi-analytical model using mean values of P-E parameters determined at the 50% light depth provided good agreement with C-14 in situ estimates at the discrete 50% light depth and for the water-column integrated primary production. (C) 2004 Elsevier Ltd. All rights reserved.

Aitsam, A, Hansen HP, Elken J, Kahru M, Laanemets J, Pajuste M, Pavelson J, Talpsepp L.  1984.  Physical and Chemical Variability of the Baltic Sea - a Joint Experiment in the Gotland Basin. Continental Shelf Research. 3:291-310.   10.1016/0278-4343(84)90013-x   AbstractWebsite

An area of 25 × 30 nmi with a subarea of 20 × 20 nmi in the Baltic Sea Gotland Basin was surveyed for about one month by vertical CTD and fluorometric chlorophyll a casts, and by towed profiles with a chemical profiler (nutrients, CTD, O2, pH) and an undulating CTD. Autonomous current meter data were available for the same period.Five CTD surveys with a 5-mile spacing showed the existence of synoptic eddies and several other perturbations. A first mode eddy (with all the isopycnals lifted within the halocline) had reduced salinities in the upper layer and chlorophyll concentrations were reduced by 2 to 3-fold. A second mode eddy (with the isopycnals lifted in the top of the halocline and lowered in the bottom layers) with a diameter of 20 km was under prolonged observation. Anticyclonic currents at 96-m depth were up to 25 cm s−1. Along the section across the eddy at 80-m depth, the mean nitrate concentration dropped from about 7 to 8 to 5 μmol dm−3 while other chemical parameters lacked intense variations. An increased activity of the intrusive fine-structure was detected in the eddy center. The Baltic eddies are essentially non-linear, and transport water in their ‘nuclei’. An internal front, separating waters with different T,S composition, was discovered in the upper layers.The observations are discussed with respect to discovering long-term trends while monitoring the Baltic environment.

Anderson, CR, Kudela RM, Kahru M, Chao Y, Rosenfeld LK, Bahr FL, Anderson DM, Norris TA.  2016.  Initial skill assessment of the California Harmful Algae Risk Mapping (C-HARM) system. Harmful Algae. 59:1-18.   10.1016/j.hal.2016.08.006   AbstractWebsite

Toxic algal events are an annual burden on aquaculture and coastal ecosystems of California. The threat of domoic acid (DA) toxicity to human and wildlife health is the dominant harmful algal bloom (HAB) concern for the region, leading to a strong focus on prediction and mitigation of these blooms and their toxic effects. This paper describes the initial development of the California Harmful Algae Risk Mapping (C-HARM) system that predicts the spatial likelihood of blooms and dangerous levels of DA using a unique blend of numerical models, ecological forecast models of the target group, Pseudo-nitzschia, and satellite ocean color imagery. Data interpolating empirical orthogonal functions (DINEOF) are applied to ocean color imagery to fill in missing data and then used in a multivariate mode with other modeled variables to forecast biogeochemical parameters. Daily predictions (nowcast and forecast maps) are run routinely at the Central and Northern California Ocean Observing System (CeNCOOS) and posted on its public website. Skill assessment of model output for the nowcast data is restricted to nearshore pixels that overlap with routine pier monitoring of HABs in California from 2014 to 2015. Model lead times are best correlated with DA measured with solid phase adsorption toxin tracking (SPATI') and marine mammal strandings from DA toxicosis, suggesting long-term benefits of the HAB predictions to decision making. Over the next three years, the C-HARM application system will be incorporated into the NOAA operational HAB forecasting system and HAB Bulletin. (C) 2016 Elsevier B.V. All rights reserved.