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Levin, LA.  1994.  Paleoecology and ecology of xenophyophores. Palaios. 9:32-41.   10.2307/3515076   AbstractWebsite

Xenophyophores are large (several mm to 25 cm diameter), agglutinating protozoans, found primarily in the deep sea. Tests range from simple fans, discs or mudballs, to elaborately folded or reticulated forms, and often contain specific particle types or sizes. Xenophyophore densities are highest on sloped sediments associated with seamounts, continental slopes, canyons and trenches, and beneath productive surface waters. Most forms live as epibenthos on hard or soft substrates, feeding on surface deposits and suspended particles, but one endobenthic genus has been described. Modern xenophyophores enhance particle flux to the seabed, creating local regions of intense radiotracer and metazoan activity. Features key to xenophyophore identification in the fossil record include distinct test morphologies that sometimes involve incorporation of globigerinacean tests, sandwich-like structure in cross section, concentrations of barite (found within the protoplasm), and the presence of fecal strands containing many 10 to 20 mm fecal pellets having enhanced Pb contents. While xenophyophores have no confirmed fossil record, modern structures resembling the ichnogenus Paleodictyon are made by endobenthic xenophyophores in the genus Occultammina. Parallel distributions, morphologies and behaviors have been proposed for some graphoglyptid trace fossils, and for some xenophyophores in the families Syringamminidae and Reticulamminidae. Both occur in the deep sea, have regular or irregular network morphologies, and have been proposed to garden bacteria, trap meiofauna, or suspension feed. Fossils previously regarded as phylloid and fucoid algae, and several species of Aschemonella, previously regarded as foraminiferids, have lifestyles and morphologies consistent with those of modern epibenthic xenophyophores. Confirmation of xenophyophore presence in stratigraphic sequences could provide paleohabitat information and help elucidate the origins of this protozoan group.

Levin, LA, Bridges TS.  1995.  Pattern and diversity in reproduction and development. Ecology of marine invertebrate larvae. ( McEdward LR, Ed.).:1-48., Boca Raton: CRC Press Abstract
Wishner, KF, Ashjian CJ, Gelfman C, Gowing MM, Kann L, Levin LA, Mullineaux LS, Saltzman J.  1995.  Pelagic and benthic ecology of the lower interface of the Eastern Tropical Pacific oxygen minimum zone. Deep-Sea Research Part I-Oceanographic Research Papers. 42:93-115.   10.1016/0967-0637(94)00021-j   AbstractWebsite

The distributions of pelagic and benthic fauna were examined in relation to the lower boundary of the oxygen minimum zone (OMZ) on and near Volcano 7, a seamount that penetrates this feature in the Eastern Tropical Pacific. Although the broad, pronounced OMZ in this region is an effective barrier for most zooplankton, zooplankton abundances, zooplankton feeding rates, and ambient suspended particulate organic carbon (POC) peaked sharply in the lower OMZ (about 740-800 m), in association with the minimum oxygen concentration and the increasing oxygen levels just below it. Zooplankton in the lower OMZ were also larger in size, and the pelagic community included some very abundant, possibly opportunistic, species. Elevated POC and scatter in the light transmission data suggested the existence of a thin, particle-rich, and carbon-rich pelagic layer at the base of the OMZ. Gut contents of planktonic detritivores implied opportunistic ingestion of bacterial aggregates, possibly from this layer. Benthic megafaunal abundances on the seamount, which extended up to 730 m, peaked at about 800 m. There was a consistent vertical progression in the depth of first occurrence of different megafaunal taxa in this depth range, similar to intertidal zonation. Although the vertical gradients of temperature, salinity, and oxygen were gradual at the lower OMZ interface (in contrast to the upper OMZ interface at the thermocline), temporal variability in oxygen levels due to internal wave-induced vertical excursions of the OMZ may produce the distinct zonation in the benthic fauna. The characteristics of the lower OMZ interface result from biological interactions with the chemical and organic matter gradients of the OMZ. Most zooplankton are probably excluded physiologically from pronounced OMZs. The zooplankton abundance peak at the lower interface of the OMZ occurs where oxygen becomes sufficiently high to permit the zooplankton to utilize the high concentrations of organic particles that have descended through the OMZ relatively unaltered because of low metazoan abundance. A similar scenario applies to megabenthic distributions. Plankton layers and a potential short food chain (bacteria to zooplankton) at OMZ interfaces suggest intense utilization and modification of organic material, localized within a thin midwater depth zone. This could be a potentially significant filter for organic material sinking to the deep-sea floor.

Chu, JW, Levin LA.  1989.  Photoperiod and temperature regulation of growth and reproduction in Streblospio benedicti (Polychaeta, Spionidae). Invertebrate Reproduction & Development. 15:131-142. AbstractWebsite

Three experiments were performed to examine responses of the polychaete Streblospio benedicti Webster from North Carolina to combinations of both constant and seasonally changing daylength and temperature. S. benedicti collected in early and late fall were reared under constant (fall) and fall-winter transition daylength and temperature conditions. S. benedicti collected in spring were reared under constant (winter) and winter-spring transition daylength and temperature conditions. In a third experiment, S. benedicti was kept at constant temperature (20°C) and two fixed daylength treatments.Survivorship and maturation of S. benedicti were unaffected by daylength, but body size (setiger number and length), brooding activity and brood size were subject to photoperiod influence. Decreasing daylength and temperature each led to slower growth in the fall-winter transition experiment. Increasing daylength and temperature led to more rapid growth in the winter-spring transition experiment. Long fixed daylength had the same effect. The proportion of females brooding declined under decreasing daylength and/or temperature, but was unaffected by most other treatments. Photoperiod had a significant and unexpected effect on fecundity in all experiments. Brood sizes were larger under conditions of decreasing or increasing daylength relative to fixed treatments. Fixed long daylength produced larger broods of larvae than fixed short daylength. We conclude that photoperiod and temperature act together to regulate growth, reproductive activity and fecundity of S. benedicti and contribute to spring and fall recruitment peaks observed in the field. Episodic events that decouple photoperiod from normal temperature regimes may cause significant fluctuations in reproductive timing and output.

Burkett, AM, Rathburn AE, Perez ME, Levin LA, Cha H, Rouse GW.  2015.  Phylogenetic placement of Cibicidoides wuellerstorfi (Schwager, 1866) from methane seeps and non-seep habitats on the Pacific margin. Geobiology. 13:44-52.   10.1111/gbi.12118   AbstractWebsite

Benthic foraminifera are among the most abundant groups found in deep-sea habitats, including methane seep environments. Unlike many groups, no endemic foraminiferal species have been reported from methane seeps, and to our knowledge, genetic data are currently sparse for Pacific deep-sea foraminifera. In an effort to understand the relationships between seep and non-seep populations of the deep-sea foraminifera Cibicidoides wuellerstorfi, a common paleo-indicator species, specimens from methane seeps in the Pacific were analyzed and compared to one another for genetic similarities of small subunit rDNA (SSU rDNA) sequences. Pacific Ocean C. wuellerstorfi were also compared to those collected from other localities around the world (based on 18S gene available on Genbank, e.g., Schweizer et al., 2009). Results from this study revealed that C. wuellerstorfi living in seeps near Costa Rica and Hydrate Ridge are genetically similar to one another at the species level. Individuals collected from the same location that display opposite coiling directions (dextral and sinstral) had no species level genetic differences. Comparisons of specimens with genetic information available from Genbank (SSU rDNA) showed that Pacific individuals, collected for this study, are genetically similar to those previously analyzed from the North Atlantic and Antarctic. These observations provide strong evidence for the true cosmopolitan nature of C. wuellerstorfi and highlight the importance of understanding how these microscopic organisms are able to maintain sufficient genetic exchange to remain within the same species between seep and non-seep habitats and over global distances.

Thistle, D, Levin LA, Gooday AJ, Pfannkuche O, Lambshead PJD.  1999.  Physical reworking by near-bottom flow alters the metazoan meiofauna of Fieberling Guyot (northeast Pacific). Deep-Sea Research Part I-Oceanographic Research Papers. 46:2041-2052.   10.1016/s0967-0637(99)00040-0   AbstractWebsite

Although much of the deep sea is physically tranquil, some regions experience near-bottom flows that rework the surficial sediment. During periods of physical reworking, animals in the reworked layer risk being suspended, which can have both positive and negative effects. Reworking can also change the sediment in ecologically important ways, so the fauna of reworked sites should differ from that of quiescent locations. We combined data from two reworked, bathyal sites on the summit of Fieberling Guyot (32 degrees 27.631'N, 127 degrees 49.489'W; 32 degrees 27.581'N, 127 degrees 47.839'W) and compared the results with those of more tranquil sites. We tested for differences in the following parameters, which seemed likely to be sensitive to the direct or indirect effects of reworking: (1) the vertical distribution of the meiofauna in the sea bed, (2) the relative abundance of surface-living harpacticoids, (3) the proportion of the fauna consisting of interstitial harpacticoids, (4) the ratio of harpacticoids to nematodes. We found that the vertical distributions of harpacticoid copepods, ostracods, and kinorhynchs were deeper on Fieberling. In addition, the relative abundance of surface-living harpacticoids was less, the proportion of interstitial harpacticoids was greater, and the ratio of harpacticoids to nematodes was greater on Fieberling. These differences between Fieberling and the comparison sites suggest that physical reworking affects deep-sea meiofauna and indicate the nature of some of the effects. (C) 1999 Elsevier Science Ltd. AII rights reserved.

McCormick, LR, Levin LA.  2017.  Physiological and ecological implications of ocean deoxygenation for vision in marine organisms. Philosophical Transactions of the Royal Society a-Mathematical Physical and Engineering Sciences. 375   10.1098/rsta.2016.0322   AbstractWebsite

Climate change has induced ocean deoxygenation and exacerbated eutrophication-driven hypoxia in recent decades, affecting the physiology, behaviour and ecology of marine organisms. The high oxygen demand of visual tissues and the known inhibitory effects of hypoxia on human vision raise the questions if and how ocean deoxygenation alters vision in marine organisms. This is particularly important given the rapid loss of oxygen and strong vertical gradients in oxygen concentration in many areas of the ocean. This review evaluates the potential effects of low oxygen (hypoxia) on visual function in marine animals and their implications for marine biota under current and future ocean deoxygenation based on evidence from terrestrial and a few marine organisms. Evolutionary history shows radiation of eye designs during a period of increasing ocean oxygenation. Physiological effects of hypoxia on photoreceptor function and light sensitivity, in combination with morphological changes that may occur throughout ontogeny, have the potential to alter visual behaviour and, subsequently, the ecology of marine organisms, particularly for fish, cephalopods and arthropods with `fast' vision. Visual responses to hypoxia, including greater light requirements, offer an alternative hypothesis for observed habitat compression and shoaling vertical distributions in visual marine species subject to ocean deoxygenation, which merits further investigation. This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'.

Neira, C, Vales M, Mendoza G, Hoh E, Levin LA.  2018.  Polychlorinated biphenyls (PCBs) in recreational marina sediments of San Diego Bay, southern California. Marine Pollution Bulletin. 126:204-214.   10.1016/j.marpolbul.2017.10.096   AbstractWebsite

Polychlorinated biphenyl (PCB) concentrations were determined in surface sediments from three recreational marinas in San Diego Bay, California. Total PCB concentrations ranged from 23 to 153, 31-294, and 151-1387 ng g(-1) for Shelter Island Yacht Basin (SIYB), Harbor Island West (HW) and Harbor Island East (HE), respectively. PCB concentrations were significantly higher in HE and PCB group composition differed relative to HW and SIYB, which were not significantly different from each other in concentration or group composition. In marina sediments there was a predominance (82-85%) of heavier molecular weight PCBs with homologous groups (6CL-7CL) comprising 59% of the total. In HE 75% of the sites exceeded the effect range median (ERM), and toxicity equivalence (TEQ dioxin-like PCBs) values were higher relative to those of HW and SIYB, suggesting a potential ecotoxicological risk.

Thorrold, SR, Zacherl DC, Levin LA.  2007.  Population connectivity and larval dispersal using geochemical signatures in calcified structures. Oceanography. 20:80-89.   AbstractWebsite

The importance of larval dispersal to the population dynamics and biogeography of marine organisms has been recognized for almost a century (Hjort, 1914; Thorson, 1950). More recently, theoretical studies have highlighted the role that connectivity may play in determining the resilience of marine populations (Hastings and Botsford, 2006). Effective spatial management of marine capture fisheries, including the design of marine reserve networks, also requires an understanding of population connectivity (Sale et al., 2005). However, remarkably few empirical estimates of larval dispersal or population connectivity in ocean environments exist.

Cook, GS, Parnell PE, Levin LA.  2014.  Population connectivity shifts at high frequency within an open-coast marine protected area network. Plos One. 9   10.1371/journal.pone.0103654   AbstractWebsite

A complete understanding of population connectivity via larval dispersal is of great value to the effective design and management of marine protected areas (MPA). However empirical estimates of larval dispersal distance, self-recruitment, and within season variability of population connectivity patterns and their influence on metapopulation structure remain rare. We used high-resolution otolith microchemistry data from the temperate reef fish Hypsypops rubicundus to explore biweekly, seasonal, and annual connectivity patterns in an open-coast MPA network. The three MPAs, spanning 46 km along the southern California coastline were connected by larval dispersal, but the magnitude and direction of connections reversed between 2008 and 2009. Self-recruitment, i.e. spawning, dispersal, and settlement to the same location, was observed at two locations, one of which is a MPA. Self-recruitment to this MPA ranged from 50-84%; within the entire 60 km study region, self-recruitment accounted for 45% of all individuals settling to study reefs. On biweekly time scales we observed directional variability in alongshore current data and larval dispersal trajectories; if viewed in isolation these data suggest the system behaves as a source-sink metapopulation. However aggregate biweekly data over two years reveal a reef network in which H. rubicundus behaves more like a well-mixed metapopulation. As one of the few empirical studies of population connectivity within a temperate open coast reef network, this work can inform the MPA design process, implementation of ecosystem based management plans, and facilitate conservation decisions.

Levin, LA, Gooday AJ.  1992.  Possible roles for xenophyophores in deep-sea carbon cycling. Deep-sea food chains and the global carbon cycle. ( Rowe GT, Pariente V, Eds.).:93-104., Dordrecht ; Boston: Kluwer Academic Publishers Abstract
Mehring, AS, Levin LA.  2015.  Potential roles of soil fauna in improving the efficiency of rain gardens used as natural stormwater treatment systems. Journal of Applied Ecology. 52:1445-1454.   10.1111/1365-2664.12525   AbstractWebsite

Natural treatment systems such as rain gardens aim to overcome the negative effects of urbanization on water quality, availability, and freshwater and marine ecosystem integrity by mimicking the natural water cycle in urban planning and design. While soils in these systems are inhabited by a diverse array of invertebrates, the soil macrofauna is ignored in the vast majority of studies on new or existing rain gardens. Here, we review the functional roles of invertebrates commonly found within soils of rain gardens. Soil fauna have the potential to substantially alter plant growth, water infiltration rates, and the retention and removal of pathogens, nutrients, heavy metals and other contaminants. Their lack of inclusion in controlled laboratory or greenhouse studies may contribute to differences in observed function in field and laboratory settings. Promising future research directions include the following: (i) the use of controlled experiments to study invertebrate effects on rain garden function; (ii) determining the factors affecting variability in organismal abundance among and within sites; and (iii) the design of rain gardens to facilitate development of fauna that promote desired functions.Synthesis and applications. Soil fauna may substantially alter the function of rain gardens as natural stormwater treatment systems in urban areas. Therefore, incorporat-ing animal effects into design and testing may better enable managers and researchers tounderstand and optimize rain garden functioning, and forecast the longevity of rain gardens. Soil fauna may substantially alter the function of rain gardens as natural stormwater treatment systems in urban areas. Therefore, incorporat-ing animal effects into design and testing may better enable managers and researchers tounderstand and optimize rain garden functioning, and forecast the longevity of rain gardens.

Parker, EA, Rippy MA, Mehring AS, Winfrey BK, Ambrose RF, Levin LA, Grant SB.  2017.  Predictive power of clean bed filtration theory for fecal indicator bacteria removal in stormwater biofilters. Environmental Science & Technology. 51:5703-5712.   10.1021/acs.est.7b00752   AbstractWebsite

Green infrastructure (also referred to as low impact development, or LID) has the potential to transform urban stormwater runoff from an environmental threat to a valuable water resource. In this paper we focus on the removal of fecal indicator bacteria (FIB, a pollutant responsible for runoff associated inland and coastal beach closures) in stormwater biofilters (a common type of green infrastructure). Drawing on a combination of previously published and new laboratory studies of FIB removal in biofilters, we find that 66% of the variance in FIB removal rates can be explained by clean bed filtration theory (CBFT, 31%), antecedent dry period (14%), study effect (8%), biofilter age (7%), and the presence or absence of shrubs (6%). Our analysis suggests that, with the exception of shrubs, plants affect FIB removal indirectly by changing the infiltration rate, not directly by changing the FIB removal mechanisms or altering filtration rates in ways not already accounted for by CBFT. The analysis presented here represents a significant step forward in our understanding of how physicochemical theories (such as CBFT) can be melded with hydrology, engineering design, and ecology to improve the water quality benefits of green infrastructure.