Publications

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2019
Lennert-Cody, CE, Clarke SC, Aires-da-Silva A, Maunder MN, Franks PJS, Roman M, Miller AJ, Minami M.  2019.  The importance of environment and life stage on interpretation of silky shark relative abundance indices for the equatorial Pacific Ocean. Fisheries Oceanography. 28:43-53.   10.1111/fog.12385   AbstractWebsite

Recent large fluctuations in an index of relative abundance for the silky shark in the eastern Pacific Ocean have called into question its reliability as a population indicator for management. To investigate whether these fluctuations were driven by environmental forcing rather than true changes in abundance, a Pacific-wide approach was taken. Data collected by observers aboard purse-seine vessels fishing in the equatorial Pacific were used to compute standardized trends in relative abundance by region, and where possible, by shark size category as a proxy for life stage. These indices were compared to the Pacific Decadal Oscillation (PDO), an index of Pacific Ocean climate variability. Correlation between silky indices and the PDO was found to differ by region and size category. The highest correlations by shark size category were for small (<90 cm total length [TL]) and medium (90-150 cm TL) sharks from the western region of the equatorial eastern Pacific (EP) and from the equatorial western Pacific. This correlation disappeared in the inshore EP. Throughout, correlations with the PDO were generally lower for large silky sharks (>150 cm TL). These results are suggestive of changes in the small and medium silky indices being driven by movement of juvenile silky sharks across the Pacific as the eastern edge of the Indo-Pacific Warm Pool shifts location with ENSO events. Lower correlation of the PDO with large shark indices may indicate that those indices were less influenced by environmental forcing and therefore potentially less biased with respect to monitoring population trends.

2018
Amaya, DJ, Siler N, Xie SP, Miller AJ.  2018.  The interplay of internal and forced modes of Hadley Cell expansion: lessons from the global warming hiatus. Climate Dynamics. 51:305-319.   10.1007/s00382-017-3921-5   AbstractWebsite

The poleward branches of the Hadley Cells and the edge of the tropics show a robust poleward shift during the satellite era, leading to concerns over the possible encroachment of the globe's subtropical dry zones into currently temperate climates. The extent to which this trend is caused by anthropogenic forcing versus internal variability remains the subject of considerable debate. In this study, we use a Joint EOF method to identify two distinct modes of tropical width variability: (1) an anthropogenically-forced mode, which we identify using a 20-member simulation of the historical climate, and (2) an internal mode, which we identify using a 1000-year pre-industrial control simulation. The forced mode is found to be closely related to the top of the atmosphere radiative imbalance and exhibits a long-term trend since 1860, while the internal mode is essentially indistinguishable from the El Nio Southern Oscillation. Together these two modes explain an average of 70% of the interannual variability seen in model "edge indices" over the historical period. Since 1980, the superposition of forced and internal modes has resulted in a period of accelerated Hadley Cell expansion and decelerated global warming (i.e., the "hiatus"). A comparison of the change in these modes since 1980 indicates that by 2013 the signal has emerged above the noise of internal variability in the Southern Hemisphere, but not in the Northern Hemisphere, with the latter also exhibiting strong zonal asymmetry, particularly in the North Atlantic. Our results highlight the important interplay of internal and forced modes of tropical width change and improve our understanding of the interannual variability and long-term trend seen in observations.

2017
Bromirski, PD, Flick RE, Miller AJ.  2017.  Storm surge along the Pacific coast of North America. Journal of Geophysical Research-Oceans. 122:441-457.   10.1002/2016jc012178   AbstractWebsite

Storm surge is an important factor that contributes to coastal flooding and erosion. Storm surge magnitude along eastern North Pacific coasts results primarily from low sea level pressure (SLP). Thus, coastal regions where high surge occurs identify the dominant locations where intense storms make landfall, controlled by storm track across the North Pacific. Here storm surge variability along the Pacific coast of North America is characterized by positive nontide residuals at a network of tide gauge stations from southern California to Alaska. The magnitudes of mean and extreme storm surge generally increase from south to north, with typically high amplitude surge north of Cape Mendocino and lower surge to the south. Correlation of mode 1 nontide principal component (PC1) during winter months (December-February) with anomalous SLP over the northeast Pacific indicates that the dominant storm landfall region is along the Cascadia/British Columbia coast. Although empirical orthogonal function spatial patterns show substantial interannual variability, similar correlation patterns of nontide PC1 over the 1948-1975 and 1983-2014 epochs with anomalous SLP suggest that, when considering decadal-scale time periods, storm surge and associated tracks have generally not changed appreciably since 1948. Nontide PC1 is well correlated with PC1 of both anomalous SLP and modeled wave height near the tide gauge stations, reflecting the interrelationship between storms, surge, and waves. Weaker surge south of Cape Mendocino during the 2015-2016 El Nino compared with 1982-1983 may result from changes in Hadley circulation. Importantly from a coastal impacts perspective, extreme storm surge events are often accompanied by high waves.

2011
Bromirski, PD, Miller AJ, Flick RE, Auad G.  2011.  Dynamical suppression of sea level rise along the Pacific coast of North America: Indications for imminent acceleration. Journal of Geophysical Research-Oceans. 116   10.1029/2010jc006759   AbstractWebsite

Long-term changes in global mean sea level (MSL) rise have important practical implications for shoreline and beach erosion, coastal wetlands inundation, storm surge flooding, and coastal development. Altimetry since 1993 indicates that global MSL rise has increased about 50% above the 20th century rise rate, from 2 to 3 mm yr(-1). At the same time, both tide gauge measurements and altimetry indicate virtually no increase along the Pacific coast of North America during the satellite epoch. Here we show that the dynamical steric response of North Pacific eastern boundary ocean circulation to a dramatic change in wind stress curl, tau(xy), which occurred after the mid-1970s regime shift, can account for the suppression of regional sea level rise along this coast since 1980. Alarmingly, mean tau(xy) over the North Pacific recently reached levels not observed since before the mid-1970s regime shift. This change in wind stress patterns may be foreshadowing a Pacific Decadal Oscillation regime shift, causing an associated persistent change in basin-scale tau(xy) that may result in a concomitant resumption of sea level rise along the U.S. West Coast to global or even higher rates.

2010
Overland, JE, Alheit J, Bakun A, Hurrell JW, Mackas DL, Miller AJ.  2010.  Climate controls on marine ecosystems and fish populations. Journal of Marine Systems. 79:305-315.   10.1016/j.jmarsys.2008.12.009   AbstractWebsite

This paper discusses large-scale climate variability for several marine ecosystems and suggests types of ecosystem responses to climate change. Our analysis of observations and model results for the Pacific and Atlantic Oceans concludes that most climate variability is accounted for by the combination of intermittent 1-2 year duration events, e.g. the cumulative effect of monthly weather anomalies or the more organized El Nino/La Nina, plus broad-band "red noise" intrinsic variability operating at decadal and longer timescales. While ocean processes such as heat storage and lags due to ocean circulation provide some multi-year memory to the climate system, basic understanding of the mechanisms resulting in observed large decadal variability is lacking and forces the adoption of a "stochastic or red noise" conceptual model of low frequency variability at the present time. Thus we conclude that decadal events with rapid shifts and major departures from climatic means will occur, but their timing cannot be forecast. The responses to climate by biological systems are diverse in character because intervening processes introduce a variety of amplifications, time lags, feedbacks, and non-linearities. Decadal ecosystem variability can involve a variety of climate to ecosystem transfer functions. These can be expected to convert red noise of the physical system to redder (lower frequency) noise of the biological response, but can also convert climatic red noise to more abrupt and discontinuous biological shifts, transient climatic disturbance to prolonged ecosystem recovery, and perhaps transient disturbance to sustained ecosystem regimes. All of these ecosystem response characteristics are likely to be active for at least some locations and time periods, leading to a mix of slow fluctuations, prolonged trends, and step-like changes in ecosystems and fish populations in response to climate change. Climate variables such as temperatures and winds can have strong teleconnections (large spatial covariability) within individual ocean basins, but between-basin teleconnections, and potential climate-driven biological synchrony over several decades, are usually much weaker and a highly intermittent function of the conditions prevailing at the time within the adjoining basins. As noted in the recent IPCC 4th Assessment Report, a warming trend of ocean surface layers and loss of regional sea ice is likely before 2030, due to addition of greenhouse gases. Combined with large continuing natural climate variability, this will stress ecosystems in ways that they have not encountered for at least 100s of years. Published by Elsevier B.V.

2009
Di Lorenzo, E, Fiechter J, Schneider N, Bracco A, Miller AJ, Franks PJS, Bograd SJ, Moore AM, Thomas AC, Crawford W, Pena A, Hermann AJ.  2009.  Nutrient and salinity decadal variations in the central and eastern North Pacific. Geophysical Research Letters. 36   10.1029/2009gl038261   AbstractWebsite

Long-term timeseries of upper ocean salinity and nutrients collected in the Alaskan Gyre along Line P exhibit significant decadal variations that are shown to be in phase with variations recorded in the Southern California Current System by the California Cooperative Oceanic Fisheries Investigation (CalCOFI). We present evidence that these variations are linked to the North Pacific Gyre Oscillation (NPGO)-a climate mode of variability that tracks changes in strength of the central and eastern branches of the North Pacific gyres and of the Kuroshio-Oyashio Extension (KOE). The NPGO emerges as the leading mode of low-frequency variability for salinity and nutrients. We reconstruct the spatial expressions of the salinity and nutrient modes over the northeast Pacific using a regional ocean model hindcast from 1963-2004. These modes exhibit a large-scale coherent pattern that predicts the in-phase relationship between the Alaskan Gyre and California Current timeseries. The fact that large-amplitude, low-frequency fluctuations in salinity and nutrients are spatially phase-locked and correlated with a measurable climate index (the NPGO) open new avenues for exploring and predicting the effects of long-term climate change on marine ecosystem dynamics. Citation: Di Lorenzo, E., et al. (2009), Nutrient and salinity decadal variations in the central and eastern North Pacific, Geophys. Res. Lett., 36, L14601, doi:10.1029/2009GL038261.

2005
Di Lorenzo, E, Miller AJ, Schneider N, McWilliams JC.  2005.  The warming of the California current system: Dynamics and ecosystem implications. Journal of Physical Oceanography. 35:336-362.   10.1175/jpo-2690.1   AbstractWebsite

Long-term changes in the observed temperature and salinity along the southern California coast are studied using a four-dimensional space-time analysis of the 52-yr (1949-2000) California Cooperative Oceanic Fisheries Investigations (CalCOFI) hydrography combined with a sensitivity analysis of an eddy-permitting primitive equation ocean model under various forcing scenarios. An overall warming trend of 1.3 degrees C in the ocean surface, a deepening in the depth of the mean thermocline (18 m), and increased stratification between 1950 and 1999 are found to be primarily forced by large-scale decadal fluctuations in surface heat fluxes combined with horizontal advection by the mean currents. After 1998 the surface heat fluxes suggest the beginning of a period of cooling, consistent with colder observed ocean temperatures. Salinity changes are decoupled from temperature and appear to be controlled locally in the coastal ocean by horizontal advection by anomalous currents. A cooling trend of -0.5 degrees C in SST is driven in the ocean model by the 50-yr NCEP wind reanalysis, which contains a positive trend in upwelling-favorable winds along the southern California coast. A net warming trend of +1 degrees C in SST occurs, however, when the effects of observed surface heat fluxes are included as forcing functions in the model. Within 50-100 km of the coast, the ocean model simulations show that increased stratification/deepening of the thermocline associated with the warming reduces the efficiency of coastal upwelling in advecting subsurface waters to the ocean surface, counteracting any effects of the increased strength of the upwelling winds. Such a reduction in upwelling efficiency leads in the model to a freshening of surface coastal waters. Because salinity and nutrients at the coast have similar distributions this must reflect a reduction of the nutrient supply at the coast, which is manifestly important in explaining the observed decline in zooplankton concentration. The increased winds also drive an intensification of the mean currents of the southern California Current System (SCCS). Model mesoscale eddy variance significantly increases in recent decades in response to both the stronger upwelling winds and the warmer upper-ocean temperatures, suggesting that the stability properties of the SCCS have also changed.

2003
Auad, G, Kennett JP, Miller AJ.  2003.  North Pacific Intermediate Water response to a modern climate warming shift. Journal of Geophysical Research-Oceans. 108   10.1029/2003jc001987   AbstractWebsite

[ 1] Oceanic observations and an isopycnal ocean model simulation are used to investigate the response of North Pacific Intermediate Water ( NPIW) to atmospheric forcing associated with the well- known 1976 - 1977 climate regime shift to a warm regime. The model reproduces numerous features of NPIW including distribution, depth, temperature, and salinity. Changes in NPIW associated with the climate shift in the California coastal region were strongly influenced by an anomalous poleward flow at depth ( 300 - 1100 m). This current transports old, high salinity, low oxygen intermediate waters from the northern tropics to the midlatitudes. For depths below the mixed layer, the model reproduces observed changes in salinity, nitrates, and, to some extent, oxygen, thus suggesting that advective/ diffusive processes are dominant in determining their concentrations below 300 m, isolated from the surface effects of direct atmospheric forcing and biological processes. These changes are structurally similar to those induced by much larger, abrupt climate changes at the end of the last glacial episode.

McGowan, JA, Bograd SJ, Lynn RJ, Miller AJ.  2003.  The biological response to the 1977 regime shift in the California Current. Deep-Sea Research Part Ii-Topical Studies in Oceanography. 50:2567-2582.   10.1016/s0967-0645(03)00135-8   AbstractWebsite

Among the least understood interactions between physics and biology in the oceans are those that take place on the decadal scale. But this temporal scale is important because some of the greatest ecological events take place on this time scale. More than 50 years of measurement in the California Current System have revealed significant ecosystem changes, including a large, decadal decline in zooplankton biomass, along with a rise in upper-ocean temperature. The temperature change was a relatively abrupt shift around 1976-77, concurrent with other basin-wide changes associated with an intensification of the Aleutian Low-pressure system. This intensification generates temperature anomalies in the ocean by altering the patterns of net surface-heat fluxes, turbulent mixing, and horizontal transport. Changes in the mean abundance of zooplankton in the southern California Current have been attributed to variations in the strength of coastal upwelling, variations in the horizontal transport of nutrient-rich water from the north, or increased stratification due to warming, all of which could be affected by fluctuations in the Aleutian Low. Here we show that a deepening of the thermocline accompanied the warming and increased the stratification of the water column, leading to a decrease in the supply of plant nutrients to the upper layers. This is the most likely mechanism for the observed plankton decline, and subsequent ecosystem changes. A global change in upper-ocean heat content, accompanied by an increase in stratification and mixed-layer deepening relative to the critical depth for net production, could lead to a widespread decline in plankton abundance. (C) 2003 Elsevier Ltd. All rights reserved.